Package: ProFAST
Type: Package
Title: Probabilistic Factor Analysis for Spatially-Aware Dimension
        Reduction
Version: 1.9
Date: 2026-06-04
Authors@R: 
    c(person(given = "Wei",
             family = "Liu",
             role = c("aut", "cre"),
             email = "liuweideng@gmail.com"),
      person(given = "Xiao",
             family = "Zhang",
             role = c("aut")),
      person(given = "Jin",
             family = "Liu",
             role = "aut"))
Author: Wei Liu [aut, cre], Xiao Zhang [aut], Jin Liu [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Description: Probabilistic factor analysis for spatially-aware
        dimension reduction across multi-section spatial
        transcriptomics data with millions of spatial locations. More
        details can be referred to Wei Liu, et al. (2023)
        <doi:10.1101/2023.07.11.548486>.
License: GPL-3
Depends: R (>= 4.0.0), gtools
Imports: Rcpp (>= 1.0.10), furrr, purrr, future, ggplot2, DR.SC,
        Matrix, mclust, pbapply, irlba, Seurat, parallel, methods,
        stats, utils
LazyData: true
URL: https://github.com/feiyoung/ProFAST
BugReports: https://github.com/feiyoung/ProFAST/issues
Suggests: knitr, rmarkdown, harmony, PRECAST, performance, nnet,
        biomaRt, scater, ggrepel, RANN, grDevices
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://feiyoung.r-universe.dev
Date/Publication: 2026-06-05 09:55:12 UTC
RemoteUrl: https://github.com/feiyoung/profast
RemoteRef: HEAD
RemoteSha: 5c347782852ede0cbedf39f53f51caf189db8b28
NeedsCompilation: yes
Packaged: 2026-06-24 03:59:51 UTC; root