{
  "_id": "6a587cb5ff0138dec5d741ec",
  "Package": "MMGFM",
  "Type": "Package",
  "Title": "Multi-Study Multi-Modality Generalized Factor Model",
  "Version": "1.2.1",
  "Date": "2025-11-12",
  "Authors@R": "c(person(given = \"Wei\",\nfamily = \"Liu\",\nrole = c(\"aut\", \"cre\"),\nemail = \"liuweideng@gmail.com\"),\nperson(given = \"Qingzhi\",\nfamily = \"Zhong\",\nrole = c(\"aut\")))",
  "Author": "Wei Liu [aut, cre], Qingzhi Zhong [aut]",
  "Maintainer": "Wei Liu <liuweideng@gmail.com>",
  "Description": "We introduce a generalized factor model designed to\njointly analyze high-dimensional multi-modality data from\nmultiple studies by extracting study-shared and specified\nfactors. Our factor models account for heterogeneous noises and\noverdispersion among modality variables with augmented\ncovariates. We propose an efficient and speedy variational\nestimation procedure for estimating model parameters, along\nwith a novel criterion for selecting the optimal number of\nfactors. More details can be referred to Liu et al. (2025)\n<doi:10.48550/arXiv.2507.09889>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.2",
  "Repository": "https://feiyoung.r-universe.dev",
  "Date/Publication": "2025-12-15 13:51:30 UTC",
  "RemoteUrl": "https://github.com/feiyoung/mmgfm",
  "RemoteRef": "HEAD",
  "RemoteSha": "2c8639feacd49f4c4e432aefbb1874825634b19a",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-16 06:35:15 UTC",
    "User": "root"
  },
  "_user": "feiyoung",
  "_type": "src",
  "_file": "MMGFM_1.2.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/e2f1d2b5fc80af3b8418267e08a52a9c2fe8496979b2e2f50eb92046f0eb849f",
  "_filesize": 496787,
  "_sha256": "e2f1d2b5fc80af3b8418267e08a52a9c2fe8496979b2e2f50eb92046f0eb849f",
  "_expires": "2026-10-24T06:39:47.000Z",
  "_created": "2026-07-16T06:35:15.000Z",
  "_published": "2026-07-16T06:39:49.276Z",
  "_jobs": [
    {
      "job": 87552600994,
      "time": 149,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8367042447"
    },
    {
      "job": 87552601050,
      "time": 155,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8367043679"
    },
    {
      "job": 87552601056,
      "time": 154,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8367044361"
    },
    {
      "job": 87552601030,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8367036958"
    },
    {
      "job": 87552601027,
      "time": 129,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8367035462"
    },
    {
      "job": 87552601012,
      "time": 213,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8367061305"
    },
    {
      "job": 87552601007,
      "time": 89,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8367022854"
    },
    {
      "job": 87552601040,
      "time": 202,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8367058426"
    },
    {
      "job": 87552039617,
      "time": 214,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8366994526"
    },
    {
      "job": 87552600934,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8367031584"
    },
    {
      "job": 87552600996,
      "time": 172,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8367049192"
    },
    {
      "job": 87552601041,
      "time": 174,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8367048952"
    },
    {
      "job": 87552600992,
      "time": 144,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8367040336"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143",
  "_status": "success",
  "_upstream": "https://github.com/feiyoung/mmgfm",
  "_commit": {
    "id": "2c8639feacd49f4c4e432aefbb1874825634b19a",
    "author": "feiyoung <1029725413@qq.com>",
    "committer": "feiyoung <1029725413@qq.com>",
    "message": "'update'\n",
    "time": 1765806690
  },
  "_maintainer": {
    "name": "Wei Liu",
    "email": "liuweideng@gmail.com"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "irlba",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "GFM",
      "role": "Imports"
    },
    {
      "package": "MultiCOAP",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.10",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "feiyoung",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-35",
      "n": 3
    },
    {
      "week": "2025-46",
      "n": 1
    },
    {
      "week": "2025-51",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "feiyoung",
      "count": 12,
      "uuid": 11505493
    }
  ],
  "_userbio": {
    "uuid": 11505493,
    "type": "user",
    "name": "Wei Liu",
    "followers": 29,
    "description": "Stastistics"
  },
  "_downloads": {
    "count": 236,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MMGFM"
  },
  "_devurl": "https://github.com/feiyoung/mmgfm",
  "_searchresults": 13,
  "_topics": [
    "openblas",
    "cpp",
    "openmp"
  ],
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MMGFM.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/feiyoung/mmgfm",
  "_realowner": "feiyoung",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.1.0",
      "date": "2024-09-03"
    },
    {
      "version": "1.2.0",
      "date": "2025-08-01"
    },
    {
      "version": "1.2.1",
      "date": "2025-11-12"
    }
  ],
  "_exports": [
    "gendata_mmgfm",
    "MMGFM",
    "selectFac.MMGFM"
  ],
  "_help": [
    {
      "page": "gendata_mmgfm",
      "title": "Generate simulated data",
      "topics": [
        "gendata_mmgfm"
      ]
    },
    {
      "page": "MMGFM",
      "title": "Fit the high-dimensional multi-study multi-modality covariate-augmented generalized factor model",
      "topics": [
        "MMGFM"
      ]
    },
    {
      "page": "selectFac.MMGFM",
      "title": "Select the number of study-shared and study-specified factors for MMGFM",
      "topics": [
        "selectFac.MMGFM"
      ]
    }
  ],
  "_readme": "https://github.com/feiyoung/mmgfm/raw/HEAD/README.md",
  "_rundeps": [
    "codetools",
    "doSNOW",
    "foreach",
    "GFM",
    "irlba",
    "iterators",
    "lattice",
    "MASS",
    "Matrix",
    "MultiCOAP",
    "Rcpp",
    "RcppArmadillo",
    "snow"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.32+ds-5",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "simu_MMGFM.Rmd",
      "filename": "simu_MMGFM.html",
      "title": "MMGFM: simulation1",
      "author": "Wei Liu",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Generate the simulated data",
        "Compare with other methods",
        "Comparison of performance"
      ],
      "created": "2025-02-04 13:23:16",
      "modified": "2025-02-04 13:23:16",
      "commits": 1
    },
    {
      "source": "simu2_MMGFM.Rmd",
      "filename": "simu2_MMGFM.html",
      "title": "MMGFM: simulation2",
      "author": "Wei Liu",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Generate the simulated data",
        "Compare with other methods",
        "Comparison of performance",
        "Choose number of factors"
      ],
      "created": "2025-02-04 13:23:16",
      "modified": "2025-02-04 13:23:16",
      "commits": 1
    }
  ],
  "_score": 4.5910646070264995,
  "_indexed": true,
  "_nocasepkg": "mmgfm",
  "_universes": [
    "feiyoung"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:49.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/f78e0dd6701631eac01ec42852717bd845cff570d8ed18f7a0a64e2af47c97ec",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:41.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/9ca05c43259046886e99541d12873e3626a4cb51fdbb32e1432c73ef2456c710",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:53.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/0b35c54367f38ce92841e5581b8738d592bc1af2646863aa9a81c0163494cc27",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:24.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/c1247c94892554e1c4aed4a7f03c731994c2e206b16232e6b500d0b17f5a67cd",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:25.000Z",
      "arch": "aarch64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/19dd7e568333b3f6222c67a2e6554be9bd56ed979332c7a6517af317bf176d50",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.1",
      "date": "2026-07-16T06:38:17.000Z",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/5a0e6721c0408a731132ac936c29eca32dc9bd452f2e9be70386b89715dcd57c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.2.1",
      "date": "2026-07-16T06:36:53.000Z",
      "arch": "aarch64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/db2e6009ecbdcdf6d33d75bff244155ba519cc3f934173a5ce055cf77df23a27",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.2.1",
      "date": "2026-07-16T06:38:13.000Z",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/25ac830a92bacae9ef37786692fe67315350e40447a35adc7bba62ed2d8fb822",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:38.000Z",
      "arch": "emscripten",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/b0f7f89a17f6b25a85fe3d497c0920826ea5f17cfcfac20864e38f0c1e19bec7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:16.000Z",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/91d4f6fcd675596b6bf8eebc14eb6e512d1b547a1fc21657ee5b814a53de2728",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:17.000Z",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/10ddabfa0a19fefa41a4c5e345bd1ba1c6812d9355e0f6a9faa6c7c434731cb2",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.2.1",
      "date": "2026-07-16T06:37:06.000Z",
      "arch": "x86_64",
      "commit": "2c8639feacd49f4c4e432aefbb1874825634b19a",
      "fileid": "https://r2.ropensci.org/68bdda2f0f488662ce791a8b1abc6187f599da2440c5c5559fccadd733cfad9d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/feiyoung/actions/runs/29476985143"
    }
  ]
}